This script quickly opens as a VirtualStack the typical DCIMG files generated with Hamamatsu DCIMG ImageJ VirtualStack Opener So if the resulting movie makes no sense, you might have to change finfo.intelByteOrder to 1 in the script. And I have no idea where that info is stored inside the HIS file (I am not even sure it is actually stored). It looks like at some point Hokawo changed bit endianness. Select HIS opener from the ImageJ plugins menu and select the HIS file. Restart ImageJ and HIS opener should appear at the bottom of the Plugins menu. Typical location is FIJI.app/plugins/Scripts/Plugins To download only thatįile press the Raw button and 'Save As' in your browser. InstallationĬopy the file HIS_opener.py somwhere inside the plugins folder in ImageJ. This is due to aĬhange in metadata length inside the HIS file and cannot be easily avoided without a sequential opening Might be corrupted (you will see that if the image starts to 'travel'). If you see 'Inconsistent METADATA' in the HIS parameters window it means that the stack Hokawo and Hamamatsu Orca cameras (tested on Orca Flash 2.8 and 4.0 and Hokawo This script quickly opens as a VirtualStack the typical HIS files generated with Verification of precaching on incomplete HIS files

This HIS reader makes use of a precaching hack to predict frames positions, but if you have issues pulling specific frames, you might want to look at the precacheHISframes function inside the class.

Exp = his('/path/to/his/file.his') % To automatically load the file

How to open avi files on fiji